発表論文(Publications)

#Corresponding Author, *Equal contribution.

Fujii Y*, Yoshimura A*, & Kodama Y# (2018) A novel orange-colored bimolecular fluorescence complementation (BiFC) assay using monomeric Kusabira-Orange protein. Biotechniques, In Press.
☆本論文は、藤井雄太の修士論文研究・博士論文研究
☆本論文は、吉村彩香の卒業論文研究

Fujii Y & Kodama Y# (2018) Refinements to light sources used to analyze the chloroplast cold-avoidance response over the past century. Plant Sig Behav, In Press.

Ushijima T, Hanada K, Gotoh E, Yamori W, Kodama Y, Tanaka H, Kusano M, Fukushima A, Tokizawa M, Yamamoto YY, Tada Y, Suzuki Y & Matsushita T (2017) Light controls protein localization through phytochrome-mediated alternative promoter selection. Cell, 171:1316–1325.

Osaki Y & Kodama Y# (2017) Particle bombardment and subcellular protein localization analysis in the aquatic plant Egeria densa. PeerJ, 5:e3779
☆本論文は、大崎益秀の修士論文研究

Fujii Y, Tanaka H, Konno N, Ogasawara Y, Hamashima N, Tamura S, Hasegawa S, Hayasaki Y, Okajima K & Kodama Y# (2017) Phototropin perceives temperature based on the lifetime of its photoactivated state. Proc Natl Acad Sci U S A, 114:9206–9211. doi: 10.1073/pnas.1704462114
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☆本論文は、藤井雄太の修士論文・博士論文研究
☆本論文は、小笠原有香の卒業論文研究
☆本論文は、濵島典子の卒業論文・修士論文研究
☆本論文は、田村沙織の卒業論文・修士論文研究

Tanaka H, Sato M, Ogasawara Y, Hamashima N, Buchner O, Holzinger A, Toyooka K & Kodama Y# (2017) Chloroplast aggregation during the cold-positioning response in the liverwort Marchantia polymorpha L. J Plant Res, 130:1061–1070. doi:10.1007/s10265-017-0958-9
☆本論文は、小笠原有香の卒業論文研究
☆本論文は、濵島典子の卒業論文・修士論文研究

Hoshino S, Takisawa R & Kodama Y (2017) Swarm robotics systems based on collective behavior of chloroplasts. J Robot Mechatron, 29:602–612.

Higa T, Hasegawa S, Hayasaki Y, Kodama Y & Wada M (2017) Temperature-dependent signal transmission in chloroplast accumulation response. J Plant Res, doi:10.1007/s10265-017-0938-0

Numata K, Horii Y, Motoda Y, Hirai T, Nishitani C, Watanabe S, Kigawa T & Kodama Y (2016) Direct introduction of neomycin phosphotransferase II protein into apple leaves to confer kanamycin resistance. Plant Biotechnol, 33:403-407.

Kimura S  & Kodama Y# (2016) Actin-dependence of the chloroplast cold positioning response in the liverwort Marchantia polymorpha L. PeerJ4:e2513.
☆本論文は、木村俊の卒業論文・修士論文研究

Iizasa S, Iizasa E, Matsuzaki S, Tanaka H, Kodama Y, Watanabe K & Nagano Y (2016) Arabidopsis LBP/BPI related-1 and -2 bind to LPS directly and regulate PR1 expression. Sci Rep, 6:27527.

藤井雄太児玉豊# (2016) 誤解しないBiFC法のすゝめ:蛍光タンパク質を使ったタンパク質間相互作用イメージング 植物の生長調節, 51:48-51.
☆本論文は、藤井雄太の卒業論文・修士論文研究

Ng KK, Motoda Y, Watanabe S, Othman AS, Kigawa T, Kodama Y &  Numata K (2016) Intracellular delivery of proteins via fusion peptides in intact plants. PLoS ONE, 11(4):e0154081.

Kodama Y# (2016) Time gating of chloroplast autofluorescence allows clearer fluorescence imaging in planta. PLoS ONE, 11(3): e0152484. #Corresponding Author

Tsuboyama-Tanaka S,  Nonaka S & Kodama Y# (2015) A highly efficient AgarTrap method for genetic transformation of mature thalli of the liverwort Marchantia polymorpha L. Plant Biotechnol, 32:333-336.
☆本論文は、田中(坪山)祥子の修士論文研究

田中(坪山)祥子児玉豊# (2015) アガートラップ法:寒天に捕らえたゼニゴケを簡単に形質転換する植物の生長調節, 50:83-86. 
☆本論文は、田中(坪山)祥子の修士論文研究

Fujii Y & Kodama Y# (2015) In planta comparative analysis of improved green fluorescent proteins with reference to fluorescence intensity and bimolecular fluorescence complementation ability. Plant Biotechnol, 32:81-87.
☆本論文は、藤井雄太の卒業論文・修士論文研究

Lakshmanan M, Yoshizumi T, Sudesh K, Kodama Y & Numata K (2015) Double stranded DNA introduction into intact plant using peptide-DNA complexes. Plant Biotechnol, 32:39-45.

Chuah JA, Yoshizumi T, Kodama Y & Numata K (2015) Gene introduction into the mitochondria of Arabidopsis thaliana via peptide-based carriers. Sci Rep, 5:7751.

Tsuboyama-Tanaka S &  Kodama Y# (2015) AgarTrap-mediated genetic transformation using intact gemmae/gemmalings of the liverwort Marchantia polymorpha L. J Plant Res, 128:337-344.
☆本論文は、田中(坪山)祥子の修士論文研究

Numata K, Ohtani M, Yoshizumi T, Demura T & Kodama Y (2014) Local gene silencing in plants via synthetic dsRNA and carrier peptide. Plant Biotechnol J, 12:1027-1034.

Tsuboyama S & Kodama Y# (2014) AgarTrap: a simplified Agrobacterium-mediated transformation method for sporelings of the liverwort Marchantia polymorpha L. Plant Cell Physiol, 55:229-236.
☆本論文は、坪山祥子の修士論文研究

Ogasawara Y, Ishizaki K, Kohchi T & Kodama Y# (2013) Cold-induced organelle relocation in the liverwort Marchantia polymorpha L. Plant Cell Environ, 36:1520-1528.
☆本論文は、小笠原有香の卒業論文研究

See also AoB Blog “When the going gets tough….. the organelles get going”
See also AoB Blog “Relocation, relocation, relocation…”

Lakshmanan M, Kodama Y, Yoshizumi T, Sudesh K & Numata K (2013) Rapid and efficient gene delivery into plant cells using designed peptide carriers. Biomacromolecules, 14, 10-16.

Kodama Y# & Hu C-D# (2013) Bimolecular fluorescence complementation (BiFC) analysis of protein-protein interaction: How to calculate signal-to-noise ratio. Methods Cell Biol, 113, 107-121. (Protocol)

Kodama Y# & Hu C-D# (2012) Bimolecular fluorescence complementation (BiFC): A 5-year update and future perspectives. BioTechniques, 53:285–298. (Review)

Kodama Y, Suetsugu N & Wada M (2011) Novel protein-protein interaction family proteins involved in chloroplast movement response. Plant Signal Behav, 6:483-490. (Review)

Kodama Y# (2011) A bright green-colored bimolecular fluorescence complementation assay in living plant cells. Plant Biotechnol, 28:95-98.

Kodama Y# & Hu C-D# (2010) An improved bimolecular fluorescence complementation assay with a high signal-to-noise ratio. BioTechniques, 49:793-805.
See also BioSpotlight in BioTechniques “Venus rising”

Kodama Y*, Suetsugu N*, Kong S-G & Wada M (2010) Two interacting coiled-coil proteins, WEB1 and PMI2, maintain the chloroplast photorelocation movement velocity in Arabidopsis.Proc Nat Acad Sci USA, 107:19591-19596.

Kodama Y & Wada M (2009) Simultaneous visualization of two protein complexes in a single plant cell by using multicolor fluorescence complementation analysis. Plant Mol Biol, 70:211-217.

Kodama Y*, Tamura T*, Hirasawa W*, Nakamura K & Sano H (2009) A novel protein phosphorylation pathway involved in osmotic-stress response in tobacco plants. Biochimie, 91:533-539.

Kodama Y, Tsuboi H, Kagawa T & Wada M (2008) Low temperature-induced chloroplast relocation mediated by a blue light receptor, phototropin 2, in fern gametophytes. J Plant Res, 121:441-448.

See also Awards for excellence in Journal of Plant Research “Best Paper Awards 2009”

Kodama Y*, Shinya T* & Sano H (2008) Dimerization of N-methyltransferases involved in caffeine biosynthesis. Biochimie, 90:547-551.

Kodama Y & Sano H (2007) Functional diversification of a basic helix-loop-helix protein due to alternative transcription during generation of amphidiploidy in tobacco plants. Biochem J, 403:493-499.

See also Commentary Article in Biochemical Journal “Evolutionary tinkering: birth of a novel chloroplast protein”

Kodama Y# (2007) Plastidic proteins containing motifs of nuclear transcription factors. Plant Biotechnol, 24:165-170. (Review)

Kodama Y# & Hiroshi Sano (2007) A comparative analysis of basic helix-loop-helix proteins, AtPTF1 and NtWIN4, with reference to plastid localization. Plant Biotechnol, 24:335-338.

Yano A, Kodama Y, Koike A, Shinya T, Kim H-J, Matsumoto M, Ogita S, Wada Y, Ohad N & Sano H (2006) Interaction between methylated-DNA binding protein and Ran GTPase during cell division in tobacco cultured cells. Ann Bot, 98:1179-1187.

See also ContentSnapshots in Annals of Botany “Functions of methyl DNA-binding protein during cell division”

Kodama Y & Sano H (2006) Evolution of a basic helix-loop-helix protein from the transcriptional repressor to a plastid-resident regulatory factor – involvement in hypersensitive cell death in tobacco plants. J Biol Chem, 281:35369-35380.

Yap Y-K*, Kodama Y*, Waller F*, Chung K-M*, Ueda H*, Nakamura K*, Oldsen M, Yoda H, Yamaguchi Y & Sano H (2005) Activation of a novel transcription factor through phosphorylation by WIPK, a wound-induced mitogen-activated protein kinase in tobacco plants. Plant Physiol, 139:127-137.