#Corresponding Author, *Equal contribution, Kodama lab member.

Midorikawa K, Tsuchiya K#, Law S, Miyagi Y, Asai T, Iino T, Ozeki Y, Kodama Y#, Numata K# (2020 ) Raman probes designed for uptake into plant cells. RSC Chem Biol, in press.

Kawasaki R, Tsuchiya K#, Kodama Y, Numata K# (2020 ) Development of reactive oxygen species-triggered degradable nanoparticles using oligoproline-containing peptides. Biomacromolecules, in press.

Tanno Y, Kato S, Takahashi S, Takaichi S, Kodama Y, Sonoike K  & Shinomura T# (2020 ) Blue light dependent induction of carotenoid biosynthesis and its effects on photo-acclimation in Euglena gracilis. J Photochem Photobiol B Biol, in press.

Fujii Y*, Ogasawara Y*, Takahashi Y*, Sakata M*, Noguchi M*, Tamura  S & Kodama Y #(2020)The cold-induced switch in direction of chloroplast relocation occurs independently of changes in endogenous phototropin levels.PLOS ONE, 15:e0233302.

坂田桃子児玉豊 #(2020)タイムゲート法と光変換型蛍光タンパク質とを組み合わせた細胞内タンパク質局在過程の追跡.Plant Morphol, 32:27-30.

Kato S, Ozasa K, Maeda M, Tanno Y, Tamaki S, Higuchi-Takeuchi M, Numata K, Kodama Y, Sato M, Toyooka K & Shinomura T# (2020) Carotenoids in the eyespot apparatus are required for triggering phototaxis in Euglena gracilis. Plant J, 100:1091-1102.

Kikuchi M, Konno N, Suzuki T, Fujii Y, Kodama Y, Isogai A & Habu N# (2020) A bacterial endo-β-1,4-glucuronan lyase, CUL-I from Brevundimonas sp. SH203, belonging to a novel polysaccharide lyase family. Protein Expr Purif, 166:105502.

Yilmaz N, Kodama Y & Numata K# (2020) Revealing the architecture of cell wall in living plant cells by bio-imaging and enzymatic degradation. Biomacromolecules, 21:95-103.

Sakata M, Kimura S, Fujii Y, Sakai T & Kodama Y#  (2019) Relationship between relocation of phototropin to the chloroplast periphery and the initiation of chloroplast movement in Marchantia polymorpha. Plant Direct, 3: e00160.

Hamashima N*, Xie X*, Hikawa M, Suzuki T & Kodama Y# (2019) A gain-of-function T-DNA insertion mutant of Marchantia polymorpha hyper-accumulates flavonoid riccionidin A. Plant Biotechnol,  36:201-204.

Shinotsuka R, Oba T#, Mitome T, Masuya T, Ito S, Murakami Y, Kagenishi TKodama Y, Matsuda M, Yoshida T, Wakamori M, Ohkura M & Nakai J (2019) Synthesis of quinolyl-pyrrole derivatives as novel environment-sensitive fluorescent probes. J Photochem Photobiol A Chem,  382:111900.

児玉豊 #(2019)植物はどうやって温度を感じるのか.生物工学, 97:352.

児玉豊 #(2019)葉緑体の寒冷逃避反応.植物の生長調節, 54:44-48.

児玉豊 #(2019)タイムゲート法:植物における蛍光バイオイメージングの技術革新.OplusE, 41:401-403.

Hikawa M, Nishizawa K & Kodama Y# (2019) Prediction of prospective leaf morphology in lettuce based on intracellular chloroplast position. Sci Hortic, 251:20-24. (bioRxiv, 543538)

Midorikawa K, Kodama Y# & Numata K# (2019) Vacuum/compression infiltration-mediated permeation pathway of a peptide-pDNA complex as a non-viral carrier for gene delivery in planta. Sci Rep, 9:271.

児玉豊 #(2018)植物が温度を感じる仕組み〜ようやく発見!植物の温度センサー分子〜.化学と生物, 57:21-28.

Tsuboyama S & Kodama Y# (2018) Highly efficient G-AgarTrap-mediated transformation of the Marchantia polymorpha model strains Tak-1 and Tak-2. Plant Biotechnol, 35:399-403.

Tsuboyama S, Nonaka S, Ezura H & Kodama Y# (2018) Improved G-AgarTrap: A highly efficient transformation method for intact gemmalings of the liverwort Marchantia polymorpha. Sci Rep, 8:10800.

Konno R, Tanaka H & Kodama Y# (2018) SKLPT imaging: efficient in vivo pre-evaluation of genome-editing modules using fluorescent protein with peroxisome targeting signal. Biochem Biophys Res Commun, 503:235-241.

Tanaka H*, Suzuki R*, Okabe N, Suzuki T & Kodama Y# (2018) Salinity stress-responsive transcription factors in the liverwort Marchantia polymorpha. Plant Biotechnol, 35:281-284.

沼田圭司#、土屋康佑、児玉豊 (2018)オルガネラ反応クラスターが切り拓くバイオマス社会.植物の生長調節, 53:80-83.

Yoshizumi T, Oikawa K, Chuah JA, Kodama Y, & Numata K# (2018) Selective gene delivery for integrating exogenous DNA into plastid and mitochondrial genomes using peptide-DNA complexes. Biomacromolecules, 19:1582-1591.

Tsuboyama-Tanaka S & Kodama Y# (2018) AgarTrap protocols on your benchtop: simple methods for Agrobacterium-mediated genetic transformation of the liverwort Marchantia polymorpha. Plant Biotechnol, 35:93-99. (Review)

Fujii Y*, Yoshimura A* & Kodama Y# (2018) A novel orange-colored bimolecular fluorescence complementation (BiFC) assay using monomeric Kusabira-Orange protein. Biotechniques, 64:153–161.

Fujii Y & Kodama Y# (2018) Refinements to light sources used to analyze the chloroplast cold-avoidance response over the past century. Plant Signal Behav, e1411452. (Article Addendum)

Ushijima T*, Hanada K*, Gotoh E, Yamori W, Kodama Y, Tanaka H, Kusano M, Fukushima A, Tokizawa M, Yamamoto YY, Tada Y, Suzuki Y & Matsushita T# (2017) Light controls protein localization through phytochrome-mediated alternative promoter selection. Cell, 171:1316–1325.

Osaki Y & Kodama Y# (2017) Particle bombardment and subcellular protein localization analysis in the aquatic plant Egeria densa. PeerJ, 5:e3779

Fujii Y, Tanaka H, Konno N, Ogasawara Y, Hamashima N, Tamura S, Hasegawa S, Hayasaki Y, Okajima K & Kodama Y# (2017) Phototropin perceives temperature based on the lifetime of its photoactivated state. Proc Natl Acad Sci U S A, 114:9206–9211.
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Tanaka H, Sato M, Ogasawara Y, Hamashima N, Buchner O, Holzinger A, Toyooka K & Kodama Y# (2017) Chloroplast aggregation during the cold-positioning response in the liverwort Marchantia polymorpha L. J Plant Res, 130:1061–1070.

Hoshino S#, Takisawa R & Kodama Y (2017) Swarm robotics systems based on collective behavior of chloroplasts. J Robot Mechatron, 29:602–612.

Higa T, Hasegawa S, Hayasaki Y, Kodama Y & Wada M# (2017) Temperature-dependent signal transmission in chloroplast accumulation response. J Plant Res, 130:1061-1070.

Numata K#, Horii Y, Motoda Y, Hirai T, Nishitani C, Watanabe S, Kigawa T & Kodama Y (2016) Direct introduction of neomycin phosphotransferase II protein into apple leaves to confer kanamycin resistance. Plant Biotechnol, 33:403-407.

Kimura S  & Kodama Y# (2016) Actin-dependence of the chloroplast cold positioning response in the liverwort Marchantia polymorpha L. PeerJ4:e2513.

Iizasa S#, Iizasa E, Matsuzaki S, Tanaka H, Kodama Y, Watanabe K & Nagano Y# (2016) Arabidopsis LBP/BPI related-1 and -2 bind to LPS directly and regulate PR1 expression. Sci Rep, 6:27527.

藤井雄太児玉豊# (2016) 誤解しないBiFC法のすゝめ:蛍光タンパク質を使ったタンパク質間相互作用イメージング. 植物の生長調節, 51:48-51.

Ng KK, Motoda Y, Watanabe S, Othman AS, Kigawa T, Kodama Y &  Numata K# (2016) Intracellular delivery of proteins via fusion peptides in intact plants. PLoS ONE, 11:e0154081.

Kodama Y# (2016) Time gating of chloroplast autofluorescence allows clearer fluorescence imaging in planta. PLoS ONE, 11: e0152484.

Tsuboyama-Tanaka S,  Nonaka S & Kodama Y# (2015) A highly efficient AgarTrap method for genetic transformation of mature thalli of the liverwort Marchantia polymorpha L. Plant Biotechnol, 32:333-336.

田中(坪山)祥子児玉豊# (2015) アガートラップ法:寒天に捕らえたゼニゴケを簡単に形質転換する.植物の生長調節, 50:83-86. 

Fujii Y & Kodama Y# (2015) In planta comparative analysis of improved green fluorescent proteins with reference to fluorescence intensity and bimolecular fluorescence complementation ability. Plant Biotechnol, 32:81-87.

Lakshmanan M, Yoshizumi T, Sudesh K, Kodama Y & Numata K# (2015) Double stranded DNA introduction into intact plant using peptide-DNA complexes. Plant Biotechnol, 32:39-45.

Chuah JA, Yoshizumi T, Kodama Y & Numata K# (2015) Gene introduction into the mitochondria of Arabidopsis thaliana via peptide-based carriers. Sci Rep, 5:7751.

Tsuboyama-Tanaka S &  Kodama Y# (2015) AgarTrap-mediated genetic transformation using intact gemmae/gemmalings of the liverwort Marchantia polymorpha L. J Plant Res, 128:337-344.

Numata K#, Ohtani M, Yoshizumi T, Demura T & Kodama Y (2014) Local gene silencing in plants via synthetic dsRNA and carrier peptide. Plant Biotechnol J, 12:1027-1034.

Tsuboyama S & Kodama Y# (2014) AgarTrap: a simplified Agrobacterium-mediated transformation method for sporelings of the liverwort Marchantia polymorpha L. Plant Cell Physiol, 55:229-236.

Ogasawara Y, Ishizaki K, Kohchi T & Kodama Y# (2013) Cold-induced organelle relocation in the liverwort Marchantia polymorpha L. Plant Cell Environ, 36:1520-1528.

See also AoB Blog “When the going gets tough….. the organelles get going”
See also AoB Blog “Relocation, relocation, relocation…”

Lakshmanan M, Kodama Y, Yoshizumi T, Sudesh K & Numata K# (2013) Rapid and efficient gene delivery into plant cells using designed peptide carriers. Biomacromolecules, 14:10-16.

Kodama Y# & Hu C-D# (2013) Bimolecular fluorescence complementation (BiFC) analysis of protein-protein interaction: How to calculate signal-to-noise ratio. Methods Cell Biol, 113:107-121. (Protocol)

Kodama Y# & Hu C-D# (2012) Bimolecular fluorescence complementation (BiFC): A 5-year update and future perspectives. Biotechniques, 53:285–298. (Review)

Kodama Y, Suetsugu N & Wada M# (2011) Novel protein-protein interaction family proteins involved in chloroplast movement response. Plant Signal Behav, 6:483-490. (Review)

Kodama Y# (2011) A bright green-colored bimolecular fluorescence complementation assay in living plant cells. Plant Biotechnol, 28:95-98.

Kodama Y# & Hu C-D# (2010) An improved bimolecular fluorescence complementation assay with a high signal-to-noise ratio. Biotechniques, 49:793-805.
See also BioSpotlight in BioTechniques “Venus rising”

Kodama Y*, Suetsugu N*, Kong S-G & Wada M# (2010) Two interacting coiled-coil proteins, WEB1 and PMI2, maintain the chloroplast photorelocation movement velocity in ArabidopsisProc Nat Acad Sci USA, 107:19591-19596.

Kodama Y & Wada M# (2009) Simultaneous visualization of two protein complexes in a single plant cell by using multicolor fluorescence complementation analysis. Plant Mol Biol, 70:211-217.

Kodama Y*, Tamura T*, Hirasawa W*, Nakamura K & Sano H# (2009) A novel protein phosphorylation pathway involved in osmotic-stress response in tobacco plants. Biochimie, 91:533-539.

Kodama Y, Tsuboi H, Kagawa T & Wada M# (2008) Low temperature-induced chloroplast relocation mediated by a blue light receptor, phototropin 2, in fern gametophytes. J Plant Res, 121:441-448.

See also Awards for excellence in Journal of Plant Research “Best Paper Awards 2009”

Kodama Y*, Shinya T* & Sano H# (2008) Dimerization of N-methyltransferases involved in caffeine biosynthesis. Biochimie, 90:547-551.

Kodama Y & Sano H# (2007) Functional diversification of a basic helix-loop-helix protein due to alternative transcription during generation of amphidiploidy in tobacco plants. Biochem J, 403:493-499.

See also Commentary Article in Biochemical Journal “Evolutionary tinkering: birth of a novel chloroplast protein”

Kodama Y# (2007) Plastidic proteins containing motifs of nuclear transcription factors. Plant Biotechnol, 24:165-170. (Review)

Kodama Y# & Sano H (2007) A comparative analysis of basic helix-loop-helix proteins, AtPTF1 and NtWIN4, with reference to plastid localization. Plant Biotechnol, 24:335-338.

Yano A, Kodama Y, Koike A, Shinya T, Kim H-J, Matsumoto M, Ogita S, Wada Y, Ohad N & Sano H# (2006) Interaction between methylated-DNA binding protein and Ran GTPase during cell division in tobacco cultured cells. Ann Bot, 98:1179-1187.

See also ContentSnapshots in Annals of Botany “Functions of methyl DNA-binding protein during cell division”

Kodama Y & Sano H# (2006) Evolution of a basic helix-loop-helix protein from the transcriptional repressor to a plastid-resident regulatory factor – involvement in hypersensitive cell death in tobacco plants. J Biol Chem, 281:35369-35380.

Yap Y-K*, Kodama Y*, Waller F*, Chung K-M*, Ueda H*, Nakamura K*, Oldsen M, Yoda H, Yamaguchi Y & Sano H# (2005) Activation of a novel transcription factor through phosphorylation by WIPK, a wound-induced mitogen-activated protein kinase in tobacco plants. Plant Physiol, 139:127-137.