発表論文(Publications)

#Corresponding Author, *Equal contribution.

Osaki Y & Kodama Y# (2017) Particle bombardment and subcellular protein localization analysis in the aquatic plant Egeria densa. PeerJ, 5:e3779
☆本論文は、大崎益秀の修士論文研究

Fujii Y, Tanaka H, Konno N, Ogasawara Y, Hamashima N, Tamura S, Hasegawa S, Hayasaki Y, Okajima K & Kodama Y# (2017) Phototropin perceives temperature based on the lifetime of its photoactivated state. Proc Natl Acad Sci U S A, 114:9206–9211. doi: 10.1073/pnas.1704462114
☆本論文は、藤井雄太の修士論文・博士論文研究
☆本論文は、小笠原有香の卒業論文研究
☆本論文は、濵島典子の卒業論文・修士論文研究
☆本論文は、田村沙織の卒業論文・修士論文研究

Tanaka H, Sato M, Ogasawara Y, Hamashima N, Buchner O, Holzinger A, Toyooka K & Kodama Y# (2017) Chloroplast aggregation during the cold-positioning response in the liverwort Marchantia polymorpha L. J Plant Res, doi:10.1007/s10265-017-0958-9
☆本論文は、小笠原有香の卒業論文研究
☆本論文は、濵島典子の卒業論文・修士論文研究

Hoshino S, Takisawa R & Kodama Y (2017) Swarm robotics systems based on collective behavior of chloroplasts. J Robot Mechatron, 29:602–612.

Higa T, Hasegawa S, Hayasaki Y, Kodama Y & Wada M (2017) Temperature-dependent signal transmission in chloroplast accumulation response. J Plant Res, doi:10.1007/s10265-017-0938-0

Numata K, Horii Y, Motoda Y, Hirai T, Nishitani C, Watanabe S, Kigawa T & Kodama Y (2016) Direct introduction of neomycin phosphotransferase II protein into apple leaves to confer kanamycin resistance. Plant Biotechnol, 33:403-407.

Kimura S  & Kodama Y# (2016) Actin-dependence of the chloroplast cold positioning response in the liverwort Marchantia polymorpha L. PeerJ4:e2513.
☆本論文は、木村俊の卒業論文・修士論文研究

Iizasa S, Iizasa E, Matsuzaki S, Tanaka H, Kodama Y, Watanabe K & Nagano Y (2016) Arabidopsis LBP/BPI related-1 and -2 bind to LPS directly and regulate PR1 expression. Sci Rep, 6:27527.

藤井雄太児玉豊# (2016) 誤解しないBiFC法のすゝめ:蛍光タンパク質を使ったタンパク質間相互作用イメージング 植物の生長調節, 51:48-51.
☆本論文は、藤井雄太の卒業論文・修士論文研究

Ng KK, Motoda Y, Watanabe S, Othman AS, Kigawa T, Kodama Y &  Numata K (2016) Intracellular delivery of proteins via fusion peptides in intact plants. PLoS ONE, 11(4):e0154081.

Kodama Y# (2016) Time gating of chloroplast autofluorescence allows clearer fluorescence imaging in planta. PLoS ONE, 11(3): e0152484. #Corresponding Author

Tsuboyama-Tanaka S,  Nonaka S & Kodama Y# (2015) A highly efficient AgarTrap method for genetic transformation of mature thalli of the liverwort Marchantia polymorpha L. Plant Biotechnol, 32:333-336.
☆本論文は、田中(坪山)祥子の修士論文研究

田中(坪山)祥子児玉豊# (2015) アガートラップ法:寒天に捕らえたゼニゴケを簡単に形質転換する植物の生長調節, 50:83-86. 
☆本論文は、田中(坪山)祥子の修士論文研究

Fujii Y & Kodama Y# (2015) In planta comparative analysis of improved green fluorescent proteins with reference to fluorescence intensity and bimolecular fluorescence complementation ability. Plant Biotechnol, 32:81-87.
☆本論文は、藤井雄太の卒業論文・修士論文研究

Lakshmanan M, Yoshizumi T, Sudesh K, Kodama Y & Numata K (2015) Double stranded DNA introduction into intact plant using peptide-DNA complexes. Plant Biotechnol, 32:39-45.

Chuah JA, Yoshizumi T, Kodama Y & Numata K (2015) Gene introduction into the mitochondria of Arabidopsis thaliana via peptide-based carriers. Sci Rep, 5:7751.

Tsuboyama-Tanaka S &  Kodama Y# (2015) AgarTrap-mediated genetic transformation using intact gemmae/gemmalings of the liverwort Marchantia polymorpha L. J Plant Res, 128:337-344.
☆本論文は、田中(坪山)祥子の修士論文研究

Numata K, Ohtani M, Yoshizumi T, Demura T & Kodama Y (2014) Local gene silencing in plants via synthetic dsRNA and carrier peptide. Plant Biotechnol J, 12:1027-1034.

Tsuboyama S & Kodama Y# (2014) AgarTrap: a simplified Agrobacterium-mediated transformation method for sporelings of the liverwort Marchantia polymorpha L. Plant Cell Physiol, 55:229-236.
☆本論文は、坪山祥子の修士論文研究

Ogasawara Y, Ishizaki K, Kohchi T & Kodama Y# (2013) Cold-induced organelle relocation in the liverwort Marchantia polymorpha L. Plant Cell Environ, 36:1520-1528.
☆本論文は、小笠原有香の卒業論文研究

See also AoB Blog “When the going gets tough….. the organelles get going”
See also AoB Blog “Relocation, relocation, relocation…”

Lakshmanan M, Kodama Y, Yoshizumi T, Sudesh K & Numata K (2013) Rapid and efficient gene delivery into plant cells using designed peptide carriers. Biomacromolecules, 14, 10-16.

Kodama Y# & Hu C-D# (2013) Bimolecular fluorescence complementation (BiFC) analysis of protein-protein interaction: How to calculate signal-to-noise ratio. Methods Cell Biol, 113, 107-121. (Protocol)

Kodama Y# & Hu C-D# (2012) Bimolecular fluorescence complementation (BiFC): A 5-year update and future perspectives. BioTechniques, 53:285–298. (Review)

Kodama Y, Suetsugu N & Wada M (2011) Novel protein-protein interaction family proteins involved in chloroplast movement response. Plant Signal Behav, 6:483-490. (Review)

Kodama Y# (2011) A bright green-colored bimolecular fluorescence complementation assay in living plant cells. Plant Biotechnol, 28:95-98.

Kodama Y# & Hu C-D# (2010) An improved bimolecular fluorescence complementation assay with a high signal-to-noise ratio. BioTechniques, 49:793-805.
See also BioSpotlight in BioTechniques “Venus rising”

Kodama Y*, Suetsugu N*, Kong S-G & Wada M (2010) Two interacting coiled-coil proteins, WEB1 and PMI2, maintain the chloroplast photorelocation movement velocity in Arabidopsis.Proc Nat Acad Sci USA, 107:19591-19596.

Kodama Y & Wada M (2009) Simultaneous visualization of two protein complexes in a single plant cell by using multicolor fluorescence complementation analysis. Plant Mol Biol, 70:211-217.

Kodama Y*, Tamura T*, Hirasawa W*, Nakamura K & Sano H (2009) A novel protein phosphorylation pathway involved in osmotic-stress response in tobacco plants. Biochimie, 91:533-539.

Kodama Y, Tsuboi H, Kagawa T & Wada M (2008) Low temperature-induced chloroplast relocation mediated by a blue light receptor, phototropin 2, in fern gametophytes. J Plant Res, 121:441-448.

See also Awards for excellence in Journal of Plant Research “Best Paper Awards 2009”

Kodama Y*, Shinya T* & Sano H (2008) Dimerization of N-methyltransferases involved in caffeine biosynthesis. Biochimie, 90:547-551.

Kodama Y & Sano H (2007) Functional diversification of a basic helix-loop-helix protein due to alternative transcription during generation of amphidiploidy in tobacco plants. Biochem J, 403:493-499.

See also Commentary Article in Biochemical Journal “Evolutionary tinkering: birth of a novel chloroplast protein”

Kodama Y# (2007) Plastidic proteins containing motifs of nuclear transcription factors. Plant Biotechnol, 24:165-170. (Review)

Kodama Y# & Hiroshi Sano (2007) A comparative analysis of basic helix-loop-helix proteins, AtPTF1 and NtWIN4, with reference to plastid localization. Plant Biotechnol, 24:335-338.

Yano A, Kodama Y, Koike A, Shinya T, Kim H-J, Matsumoto M, Ogita S, Wada Y, Ohad N & Sano H (2006) Interaction between methylated-DNA binding protein and Ran GTPase during cell division in tobacco cultured cells. Ann Bot, 98:1179-1187.

See also ContentSnapshots in Annals of Botany “Functions of methyl DNA-binding protein during cell division”

Kodama Y & Sano H (2006) Evolution of a basic helix-loop-helix protein from the transcriptional repressor to a plastid-resident regulatory factor – involvement in hypersensitive cell death in tobacco plants. J Biol Chem, 281:35369-35380.

Yap Y-K*, Kodama Y*, Waller F*, Chung K-M*, Ueda H*, Nakamura K*, Oldsen M, Yoda H, Yamaguchi Y & Sano H (2005) Activation of a novel transcription factor through phosphorylation by WIPK, a wound-induced mitogen-activated protein kinase in tobacco plants. Plant Physiol, 139:127-137.

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